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Anna Gorska

PhD-student

Office C324b 

Main projects

  • Phageome and its role in antibiotics resistance. Collaborator: Dr. med. Silke Peter, Universitätsklinikum Tübingen
  • Impact of antibiotics on a probability of MRSA/ESBL acquisition: Data mining model for SATURN project.  Collaborator: Prof. Dr. med. Evelina Tacconelli, Universitätsklinikum Tübingen
  • Assembly and comparison of genomes of the hospital-acquired MRSA strains: continuation of the SATURN project.  Collaborator: Prof. Dr. med. Surbhi Malhotra-Kumar, University of Antwerp
  • Phase the turtle! Haplotype phasing of Diamondback terrapin genome. Collaborators: Professors Mihai Pop, Michael Cummings, Steven Mount, Center for Bioinformatics and Computational Biology, University of Maryland
  • Long read and metagenomics assembly analysis in MEGAN6.

Past projects


Main publications

  • Bioinformatics I
  • Visualisation for Biological data
  • Group programming project in Java and Python
  • Pro-seminars
  • Advanced Java for Bioinformatics
  • Vorkurs for Bioinformatics

Supervised BA theses

  • Classification of phage sequences for metagenomics studies -  Jennifer Boedker
  • Development of a MobileApp/Website for advising proper antibiotics usage - Mario Wassmer
  • Design and implementation of a web portal for microbiome data - Theresa-Anisja Harbig
  • Phage identification in metagenomics data - David Rau
  • Steered Molecular Dynamics of 2fdt structure - Timo Lucas

Awards

  • Best Bioinformatics Master Theses in Poland (2014) 
  • Scholarship from Ministry of Science and Higher Education for outstanding achievement in the academic year 2012/2013
  • Rector scholarship for the academic year 2012/2013

 

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