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Publications from the Huson lab, sorted by year and author.
Huson, DH and Mitra, S (2012). Introduction to the Analysis of Environmental Sequences: Metagenomics with MEGAN In: Evolutionary Genomics: Statistical and Computational Methods, ed. by Maria Anisimova. Springer, chap. 17, pp. 415-429.
Huson, DH and Scornavacca, C (2012). Dendroscope 3: An interactive tool for rooted phylogenetic trees and networks Systematic Biology.
Lanzen, A, Joergensen, SL, Huson, DH, Gorfer, M, Grindhaug, SH, Jonassen, I, Ovreas, L, and Urich, T (2012). CREST - A Classification Resources for Environmental Sequence Tags PLoS ONE, 7(11):e49334.
Albrecht, B, Scornavacca, C, Cenci, A, and Huson, DH (2011). Fast computation of minimum hybridization networks Bioinformatics.
Huson, DH and Scornavacca, C (2011). A survey of combinatorial methods for phylogenetic networks Genome Biology and Evolution, 3:23-35.
Huson, DH, Mitra, S, Weber, N, Ruscheweyh, H, and Schuster, SC (2011). Integrative analysis of environmental sequences using MEGAN4 Genome Research, 21:1552-1560.
Klein, JD, Ossowski, S, Schneeberger, K, Weigel, D, and Huson, DH (2011). LOCAS – A Low Coverage Assembly Tool for Resequencing Projects PLoS ONE, 6(8):e23455.
Mitra, S, Rupek, P, Richter, DC, Urich, T, Gilbert, JA, Meyer, F, Wilke, A, and Huson, DH (2011). Functional analysis of metagenomes and metatranscriptomes using SEED and KEGG BMC Bioinformatics, 12(Suppl 1):S21+ .
Schneeberger, K, Ossowski, S, Ott, F, Klein, JD, Wang, X, Lanz, C, Smith, LM, Cao, J, Fitz, J, Warthmann, N, Henz, S, Huson, D, and Weigel, D (2011). Reference-guided assembly of four diverse Arabidopsis thaliana genomes . Proceedings of the National Academy of Sciences of the United States of America.
Scornavacca, C, Berry, V, and Ranwez, V (2011). Building species trees from larger parts of phylogenomic databases Information and Computation, 209(3):590-605.
Scornavacca, C, Zickmann, F, and Huson, D (2011). Tanglegrams for rooted phylogenetic trees and networks Bioinformatics, 27(13):i248-i256.
Fischer, J and Huson, DH (2010). New common ancestor problems in trees and directed acyclic graphs Information Processing Letters.
Huson, D, Rupp, R, and Scornavacca, C (2010). Phylogenetic Networks. Concepts, Algorithms and Applications Cambridge University Press. (ISBN: 9780521755962).
Huson, DH and Mitra, S (2010). Comparative metagenome analysis using MEGAN In: Handbook of Molecular Microbial Ecology I: Metagenomics and Complementary Approaches, ed. by Frans de Bruijn. Wiley Blackwell Publishers, chap. , pp. .
Mitra, S, Gilbert, JA, Field, D, and Huson, DH (2010). Comparison of multiple metagenomes using phylogenetic networks based on ecological indices ISME Journal, 4:1236–1242.
Mitra, S, Schubach, M, and Huson, DH (2010). Short clones or long clones? A simulation study on the use of paired reads in metagenomics BMC Bioinformatics, 11(Suppl 1):S12+.
Huson, DH (2009). Drawing Rooted Phylogenetic Networks IEEE/ACM Transactions on Computational Biology and Bioinformatics, 6(1):103-109.
Huson, DH, Moulton, V, and Steel, MA (2009). Special Section: Phylogenetics IEEE/ACM Transactions in computational biology and bioinformatics , 6(1):4-6.
Huson, DH, Richter, D, Mitra, S, Auch, A, and Schuster, SC (2009). Methods for comparative metagenomics BMC Bioinformatics, 10(Suppl 1):S12+.
Huson, DH, Rupp, R, Berry, V, Gambette, P, and Paul, C (2009). Computing galled networks from real data Bioinformatics, 25(12):i85-93.
Miller, W, Drautz, DI, Janecka, JE, Lesk, AM, Ratan, A, Tomsho, LP, Packard, M, Zhang, Y, McClellan, LR, Qi, J, Zhao, F, Gilbert, MT, Dal\'en, L, Arsuaga, JL, Ericson, PG, Huson, DH, Helgen, KM, Murphy, WJ, Götherström, A, and Schuster, SC (2009). The mitochondrial genome sequence of the Tasmanian tiger (Thylacinus cynocephalus). Genome research, 19(2):213-220.
Mitra, S, Klar, B, and Huson, DH (2009). Visual and statistical comparison of metagenomes Bioinformatics, 25(15):1849–1855.
Fenselau de Felippes, F, Schneeberger, K, Dezulian, T, Huson, DH, and Weigel, D (2008). Evolution of Arabidopsis thaliana microRNAs from random sequences. RNA (New York, N.Y.), 14(12):2455-2459.
Gambette, P and Huson, DH (2008). Improved Layout of Phylogenetic Networks IEEE/ACM Trans. Comput. Biology Bioinform., 5(3):472-479.
Huson, D and Rupp, R (2008). Summarizing Multiple Gene Trees Using Cluster Networks In: Proceedings of the Eighth International Workshop on Algorithms in Bioinformaticsy (WABI), vol. 5251, pp. 211–225. LNBI.
