Figures

Phylogenetic Networks - Concepts, Algorithms and Applications -

 

This table provides many of the SplitsTree and Dendroscope files used to produce the figures in the book.

 

Part I

Chapter Source files

1: Basics

1.5 a, b | 1.6

2: Sequence Alignment

2.7 d

3: Phylogenetic Trees

3.2 c | 3.3 a, b | 3.4 | 3.5 | 3.6 | 3.7 | 3.20 b, c | 3.26 a, b, c, d, e, f | 3.27 a, b, c, d | 3.28 a, b

4: Introduction to Phylogenetic Networks

 4.7

 

Part II

Chapter Source files

5: Splits and Unrooted Phylogenetic Networks

5.4 | 5.6 c | 5.9 c | 5.10 b | 5.16 b, c | 5.17 a, b, c | 5.18 a, b | 5.21

6: Clusters and Rooted Phylogenetic Networks

6.2 | 6.6 b | 6.8 a, b | 6.10 a | 6.12 b | 6.16 c | 6.17 a | 6.20 a | 6.21 a, b | 6. 27 a, b | 6.28 b

 

Part III

Chapter Source files

7: Phylogenetic Networks from Splits

7.1 a, e, g | 7.2 a, b | 7.3 a, c

8: Phylogenetic Networks from Clusters

8.1 a, b, c, d | 8.2 e, h | 8.3 e, g | 8.4 | 8.7 a, b

9: Phylogenetic Networks from Sequences

9.6 a | 9.10 i | 9.11 e | 9.16 e

10: Phylogenetic Networks from Distances

10.2 | 10.5

11: Phylogenetic Networks from Trees

11.1 a, b, c, d, e, f | 11.2 a, b, c, d | 11.3 a, b, c, d, e, f | 11.9 a, b | 11.10 a, b | 11.14 a, b, c, d | 11.18 b | 11.20 a, b

12: Phylog. Networks from Triplets or Quartets

12.1 c

13: Drawing Phylogenetic Networks

13.2 a, b, c, d, e, f | 13.3 a, b | 13.4 a | 13.5 a, b | 13.7 a, b, c, d, e | 13.8 a, b | 13.9 a, b | 13.10 a, b, c | 13.11 | 13.12 a, b, c, d, e | 13.13 a, b

14: Software

 

 

 

All available sources

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