Algorithms in Bioinformatics


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Software

Software developed by the "Algorithms in Bioinformatics" lab.

Actively supported tools

 
  • Dendroscope: An interactive viewer for large phylogenetic trees

  • DIAMOND: Fast and sensitive protein alignment (20,000x BLASTX)
  • MAIRA: Real-time taxonomic and functional analysis of long reads on a laptop
  • MEGAN6: Interactive exploration and analysis of large-scale microbiome sequencing data
  • SplitsTree5: New implementation of SplitsTree - under development
  • Tegula: Periodic tilings of the sphere, plane and hyperbolic plane (coming soon)
 

Still supported tools


Unsupported tools

  • CrossLink: Sequence relationships between (micro) RNAs
  • Darwin Rocks! Evolution of music
  • LOCAS: Low-coverage short-read assembler
  • MEGANServer: MEGANServer - Server backend for MEGAN 6 files
  • MEGAN5: Metagenome analysis. Old version of MEGAN software
  • MEGAN4: Old version of MEGAN software
  • Metasim: Sequencing simulator for genomes and metagenomes

  • microHARVESTER: microRNA predictor

  • NRPSpredictor: Specificity Prediction of Adenylation domains in NRPS

  • OSLay: Optimal Syntenic layout of unfinished assemblies

  • PAT: Protein alignment tool
  • PAUDA: Poor man's BLASTX
  • ReadSim: Sequencing simulator
  • SplitsTree3.2: Old version of SplitsTree

  • 2dTiler: Periodic tilings of the plane, sphere and hyperbolic plane

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