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MEGAN4 example datasets

Here we list the datasets used on our paper "Integrative analysis of environmental sequences using MEGAN4" (Genome Research, 2011)

MEGAN4 datasets:

Name
Description Download Link
DNA-Time1-Bag1-Gilbert2008
Mid-Bloom DNA-High CO2 dataset from [1], analysed using MEGAN4 based on BLASTX vs. NCBI-NR
 DNA-Time1-Bag1-Gilbert2008.rma (no read info)
DNA-Time1-Bag1-Gilbert2008.rma (with read info)
cDNA-Time1-Bag1-Gilbert2008
Mid-Bloom mRNA-High CO2 dataset from [1], analysed using MEGAN4 based on BLASTX vs. NCBI-NR  cDNA-Time1-Bag1-Gilbert2008.rmaz
Peptides-GOS-CAMERA-Morris2010
Original analysis of metaproteome dataset from [2], imported into MEGAN4
 Peptides-GOS-CAMERA-Morris2010.megan
Peptides-NR-Morris2010
Metaproteome dataset from [2], analysed using MEGAN4, based on BLASTP vs. NCBI-NR
 Peptides-NR-Morris2010.rma
16SrRNA-Silva-Morris2010
16S rRNA genes in [2], analysed using MEGAN4, based on BLASTN vs. Silva ver. 104
 16SrRNA-Silva-Morris2010.rma

 

References:

[1] Gilbert, J. A., Field, D., Huang, Y., Edwards, R., Li, W., Glina, P., and Joint, I. PLoS One 3, e3042 (2008).
[2] Morris, R. M., Nunn, B. L., Frazar, C., Goodlett, D. R., Ting, Y. S., and Rocap, G. ISME J 4(5), 673–685 May (2010).

 

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