Algorithms in Bioinformatics


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Bachelor theses

Here is a listing of possible topics for projects. Please come and see us if you want to learn more about the topics. Further suggestions are welcome. 

2019

  • Distinguishing between human and microbial long reads - Philipp Koch
  • 2018

    • Analyse unterschiedlicher Zellpopulationen von und nach Therapie - Can Pinar -  Co-advisor: PD Stella Autenrieth (UKT)
    • Improved taxonomic profiles based on simulated binning - Kim Radke 
    • Completeness, contamination and annotation of long read metagenome datasets - Mario Rauh

    2017

    • Analysis of antimicrobial resistance in microbiome sequencing data - done
    • Application of MetaCyc in microbiome analysis - done
    • Classification of phages and visualization -  done
    • Comparison of different KEGG-based microbiome analysis approaches - done

    2016

    • Development of a MobileApp/Website for advising proper antibiotics usage - done
    • Phage identification in metagenomics - done
    • Fast computation of consensus splits - done
    • Structural variants of Bacteroides vulgatus - done
    • Ecoli assembly - done
    • NanoChain: An Empirical Nanopore Read Simulator - done

    2015

    • Design and implementation of a web portal for microbiome data - done
    • Analysis of microbiome data in the context of Adipositas - done
    • Analysis of publicly available 16S human gut microbiome data - done
    • Deploying bioinformatics tools in the cloud using Docker -done
    • Steered Molecular Dynamics of 2fdt structure - done
    • Influence of Processing on 16S Analysis Data - done

    2014

    • Visualisierung taxonomischer Daten mit Voronoi Trees - done
    • Fast comparison of metagenomic samples - done
    • Functional analysis using BioCyce - done
    • Genes associated with diabetes in the microbiome -done

    2013

    • Comparision of metagenomic DNA, done
    • Clouding computing in bioinformatics, done
    • Android app for phylogenetic trees - done
    • Hybrid approach to analysis of 16S rRNA data - done

    2012

    • Transskriptomanalyse von Krebszellen, done

    2011

    2010

    • Plattform fĂĽr Next-Gen Transkriptomanalyse- done
     
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