Algorithms in Bioinformatics


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Bachelor theses

Here is a listing of possible topics for projects. Please come and see us if you want to learn more about the topics. Further suggestions are welcome. Old topics can be found here.

2017

  • MEGAN online. Web-based analyser for metagenomic samples - AVAILABLE, contact: Anna Gorska
  • Distinguishing between human and microbial long reads - AVAILABLE, contact: Caner Bacgi

2016

  • Classification of phages and visualization -  Jennifer Boedker(?) - contact: Anna Gorska
  • Implementation of a Times Series Analyzer - AVAILABLE, contact: Anna Gorska, with Dr. Suparna Mitra
  • Development of a MobileApp/Website for advising proper antibiotics usage - Mario Wassmer  - co-advisor: Anna Gorska
  • Phage identification in metagenomics - David Rau - co-advisor: Anna Gorska
  • Fast computation of consensus splits - Sylvia Siegel - co-advisor: Dr. Benjamin Albrecht
  • Structural variants of Bacteroides vulgatus - Robin Harmenig - co-advisor: Sina Beier & Anna Lange
  • Ecoli assembly - Tanja Hunsinger - co-advisor: Sina Beier
  • Simulation of Nanopore Sequencing - Dominic Buceck - co-advisor: Dr. Benjamin Albrecht

2015

  • Design and implementation of a web portal for microbiome data - Theresa-Anisja Harbig
  • Analysis of microbiome data in the context of Adipositas - Sanja Köhler - co-advisor: Rewati Tappu
  • Analysis of publicly available 16S human gut microbiome data - Tristan Kast- co-advisor: Sina Beier
  • Deploying bioinformatics tools in the cloud using Docker - Patrick Grupp
  • Steered Molecular Dynamics of 2fdt structure - Timo Lucas - co-advisor: Anna Gorska
  • Influence of Processing on 16S Analysis Data - Arne Weitbrecht - co-advisor: Sina Beier

2014

  • Visualisierung taxonomischer Daten mit Voronoi Trees - Carle Franck, co-advisor: Sina Beier
  • Fast comparison of metagenomic samples - Marc Uwe Engelhardt, co-advisor: Rewati Tappu
  • Functional analysis using BioCyce - Zongze Wu
  • Genes associated with diabetes in the microbiome - Adrian Geißler, co-advisor: Mohamed El Hadidi

2013

  • Comparision of metagenomic DNA, Marc Engelhardt
  • Clouding computing in bioinformatics, Pascal Schwaiger
  • Android app for phylogenetic trees - Quentin Deconchat (student internship, from University of Toulouse III)
  • Hybrid approach to analysis of 16S rRNA data - Kristina Sudeikyte

2012

  • Transskriptomanalyse von Krebszellen, Johannes Tauber, Co-advisor:  Prof. Thomas Iftner

2011

2010

  • Plattform für Next-Gen Transkriptomanalyse-  Co-advisor: Dr. Kay Sohn, Student: Stefan Lorenz
 
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