Algorithms in Bioinformatics


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Algorithms in Bioinformatics

Welcome to Daniel Huson's Lab

The main focus of our lab is on developing new and advanced algorithms for bioinformatics. Here is a short list of our current main research interests:

  • Phylogenetic networks and trees
  • Metagenome analysis and simulation
  • Genome resequencing and analysis
  • Evolution and ecology
  • Models, algorithms, software and complexity

For more details, see the research section and our list of publications.

Most recent publications:

Arumugam, K, Bagci, C, Bessarab, I, Beier, S, Buchfink, B, Gorska, A, Qiu, G, Huson, DH, and Williams, RB (2019). Annotated bacterial chromosomes from frame-shift-corrected long read metagenomic data. Microbiome, 7(61).

Vågene, AJ, Herbig, A, Campana, MG, Robles Garcia, NM, Warinner, C, Sabin, S, Spyrou, MA, Andrades Valtueña, A, Huson, D, Tuross, N, Bos, KI, and Krause, J (2018). Salmonella enterica genomes from victims of a major sixteenth-century epidemic in Mexico. Nature Ecology & Evolution, 2(3):520–528.

Recent news:

Annotated bacterial chromosomes from frame-shift-corrected long read metagenomic data: Long read metagenomics gives rise to multiple complete bacterial chromosomes

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