Algorithms in Bioinformatics


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Algorithms in Bioinformatics

Welcome to Daniel Huson's Lab

The main focus of our lab is on developing new and advanced algorithms for bioinformatics. Here is a short list of our current main research interests:

  • Phylogenetic networks and trees
  • Metagenome analysis and simulation
  • Genome resequencing and analysis
  • Evolution and ecology
  • Models, algorithms, software and complexity

For more details, see the research section and our list of publications.

Most recent publications:

Harter, J, El-Hadidi, M, Huson, DH, Kappler, A, and Behrens, S (2017). Soil biochar amendment affects the diversity of nosZ transcripts: Implications for N2O formation. Scientific Reports, 7(1):3338.

Weyrich, LS, Duchene, S, Soubrier, J, Arriola, L, Llamas, B, Breen, J, Morris, AG, Alt, KW, Caramelli, D, Dresely, V, Farrell, M, Farrer, AG, Francken, M, Gully, N, Haak, W, Hardy, K, Harvati, K, Held, P, Holmes, EC, Kaidonis, J, Lalueza-Fox, C, de la Rasilla, M, Rosas, A, Semal, P, Soltysiak, A, Townsend, G, Usai, D, Wahl, J, Huson, DH, Dobney, K, and Cooper, A (2017). Neanderthal behaviour, diet, and disease inferred from ancient DNA in dental calculus. Nature, advance online publication.

Recent news:

Open position: PhD Position (E 13 TVL. 75%, three years) in Computational Microbiome Analysis Available

MEGAN Community Edition: A new Community Edition of MEGAN is available as Open Source (GPL V3 License) here: https://github.com/danielhuson/megan-ce

MALT paper: We have just posted a manuscript on MALT: bioRxiv doi: http://dx.doi.org/10.1101/050559

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