Algorithms in Bioinformatics

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Algorithms in Bioinformatics

Welcome to Daniel Huson's Lab

The main focus of our lab is on developing new and advanced algorithms for bioinformatics. Here is a short list of our current main research interests:

  • Phylogenetic networks and trees
  • Metagenome analysis and simulation
  • Genome resequencing and analysis
  • Evolution and ecology
  • Models, algorithms, software and complexity

For more details, see the research section and our list of publications.

Most recent publications:

Weyrich, LS, Duchene, S, Soubrier, J, Arriola, L, Llamas, B, Breen, J, Morris, AG, Alt, KW, Caramelli, D, Dresely, V, Farrell, M, Farrer, AG, Francken, M, Gully, N, Haak, W, Hardy, K, Harvati, K, Held, P, Holmes, EC, Kaidonis, J, Lalueza-Fox, C, de la Rasilla, M, Rosas, A, Semal, P, Soltysiak, A, Townsend, G, Usai, D, Wahl, J, Huson, DH, Dobney, K, and Cooper, A (2017, Bdsk-Url-1 = Neanderthal behaviour, diet, and disease inferred from ancient DNA in dental calculus. Nature, advance online publication:–.

Huson, DH, Tappu, R, Bazinet, AL, Xie, C, Cummings, MP, Nieselt, K, and Rohan Williams, D (2017). Protein-alignment-guided assembly of orthologous gene families from microbiome sequencing reads. Microbiome:In press.

Recent news:

MEGAN Community Edition: A new Community Edition of MEGAN is available as Open Source (GPL V3 License) here:

MALT paper: We have just posted a manuscript on MALT: bioRxiv doi:

Tuebiom: The Tuebiom website is now up and running: