Algorithms in Bioinformatics


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Algorithms in Bioinformatics

Welcome to Daniel Huson's Lab

The main focus of our lab is on developing new and advanced algorithms for bioinformatics. Here is a short list of our current main research interests:

  • Phylogenetic networks and trees
  • Metagenome analysis and simulation
  • Genome resequencing and analysis
  • Evolution and ecology
  • Models, algorithms, software and complexity

For more details, see the research section and our list of publications.

Most recent publications:

Huson, D, Beier, S, Flade, I, G\'orska, A, El-Hadidi, M, Mitra, S, Ruscheweyh, H, and Rewati Tappu, D (2016). MEGAN Community Edition - Interactive exploration and analysis of large-scale microbiome sequencing data. PLoS Comput Biol, 12(6):e1004957.

Harter, J, Weigold, P, El-Hadidi, M, Huson, DH, Kappler, A, and Behrens, S (2016). Soil biochar amendment shapes the composition of N 2 O-reducing microbial communities. Science of The Total Environment, 562:379–390.

Recent news:

MEGAN Community Edition: A new Community Edition of MEGAN is available as Open Source (GPL V3 License) here: https://github.com/danielhuson/megan-ce

MALT paper: We have just posted a manuscript on MALT: bioRxiv doi: http://dx.doi.org/10.1101/050559

Tuebiom: The Tuebiom website is now up and running: http://www.tuebiom.de

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